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About
Rogue ("wildcard") taxa are leaves with uncertain phylogenetic position. Their position may vary from tree to tree under inference methods that yield a tree set (e.g. bootstrapping, Bayesian tree searches, maximum parsimony). The presence of rogue taxa in a tree set can potentially remove all information from a consensus tree. The information content of a consensus tree - a function of its resolution and branch support values - can often be increased by removing rogue taxa. 'Rogue' provides an explicitly information-theoretic approach to rogue detection (Smith 2022) doi:10.1093/sysbio/syab099, and an interface to 'RogueNaRok' (Aberer et al. 2013) doi:10.1093/sysbio/sys078.
Citation | Rogue citation info |
github.com/ms609/Rogue/ | |
github.com/aberer/RogueNaRok/ | |
github.com/ms609/RogueNaRok/ | |
System requirements | C99 |
Bug report | File report |
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