CRAN/E | RareComb

RareComb

Combinatorial and Statistical Analyses of Rare Events

Installation

About

A custom implementation of the apriori algorithm and binomial tests to identify combinations of features (genes, variants etc) significantly enriched for simultaneous mutations/events from sparse Boolean input, see Vijay Kumar Pounraja, Santhosh Girirajan (2021). Version 1.1 includes a minor adjustment to the number of combinations to be considered for multiple testing correction. This updated version is more conservative in its approach and hence more selective. doi:10.1101/2021.10.01.462832.

Key Metrics

Version 1.1
R ≥ 2.10
Published 2022-02-24 797 days ago
Needs compilation? no
License MIT
License File
CRAN checks RareComb results

Downloads

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Maintainer

Maintainer

Vijay Kumar Pounraja

vijaykumar.mp@gmail.com

Authors

Vijay Kumar Pounraja

aut / cre

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

RareComb archive

Depends

R ≥ 2.10

Imports

magrittr
arules
dplyr
methods
pwr
stringr
tidyr
reshape2
sqldf