CRAN/E | PeakSegJoint

PeakSegJoint

Joint Peak Detection in Several ChIP-Seq Samples

Installation

About

Jointly segment several ChIP-seq samples to find the peaks which are the same and different across samples. The fast approximate maximum Poisson likelihood algorithm is described in "PeakSegJoint: fast supervised peak detection via joint segmentation of multiple count data samples" by TD Hocking and G Bourque.

github.com/tdhock/PeakSegJoint
Bug report File report

Key Metrics

Version 2024.1.24
R ≥ 2.14
Published 2024-01-24 96 days ago
Needs compilation? yes
License GPL-3
CRAN checks PeakSegJoint results

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Maintainer

Maintainer

Toby Dylan Hocking

toby.hocking@r-project.org

Authors

Toby Dylan Hocking

Material

NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

PeakSegJoint archive

Depends

R ≥ 2.14

Imports

PeakError
parallel
penaltyLearning

Suggests

testthat
ggplot2 ≥ 2.0
microbenchmark