CRAN/E | PSSMCOOL

PSSMCOOL

Features Extracted from Position Specific Scoring Matrix (PSSM)

Installation

About

Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see for mor details. some of these features are described in Zahiri, J., et al.(2013) doi:10.1016/j.ygeno.2013.05.006, Saini, H., et al.(2016) doi:10.17706/jsw.11.8.756-767, Ding, S., et al.(2014) doi:10.1016/j.biochi.2013.09.013, Cheng, C.W., et al.(2008) doi:10.1186/1471-2105-9-S12-S6, Juan, E.Y., et al.(2009) doi:10.1109/CISIS.2009.194.

github.com/BioCool-Lab/PSSMCOOL
Bug report File report

Key Metrics

Version 0.2.4
R ≥ 3.1.0
Published 2022-01-04 844 days ago
Needs compilation? no
License GPL-3
CRAN checks PSSMCOOL results
Language en-US

Downloads

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Last 365 days 2.712 -6%

Maintainer

Maintainer

Alireza mohammadi

alireza691111@gmail.com

Authors

Javad zahiri

aut

Alireza mohammadi

aut / cre

Saber mohammadi

aut

Material

README
Reference manual
Package source

Vignettes

PSSMCOOL

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

PSSMCOOL archive

Depends

R ≥ 3.1.0

Imports

utils
gtools
infotheo
phonTools
dtt

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