CRAN/E | PACVr

PACVr

Plastome Assembly Coverage Visualization

Installation

About

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) doi:10.1186/s12859-020-3475-0.

Citation PACVr citation info
github.com/michaelgruenstaeudl/PACVr
Bug report File report

Key Metrics

Version 1.0.11
R ≥ 3.3.0
Published 2024-04-10 22 days ago
Needs compilation? no
License BSD 3-clause License
License File
CRAN checks PACVr results

Downloads

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Maintainer

Maintainer

Michael Gruenstaeudl

m_gruenstaeudl@fhsu.edu

Authors

Gregory Smith

ctb

Nils Jenke

ctb

Michael Gruenstaeudl

aut / cre

Material

Reference manual
Package source

Vignettes

PACVr

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

PACVr archive

Depends

R ≥ 3.3.0

Imports

Biostrings ≥ 2.48.0
dplyr
GenomicAlignments ≥ 1.18.1
GenomicRanges
IRanges
logger
read.gb ≥ 2.2
RCircos ≥1.2.0
grDevices
stats
utils
tidyr
R6

Suggests

testthat ≥ 3.0.0
rentrez