CRAN/E | OmicNavigator

OmicNavigator

Open-Source Software for 'Omic' Data Analysis and Visualization

Installation

About

A tool for interactive exploration of the results from 'omics' experiments to facilitate novel discoveries from high-throughput biology. The software includes R functions for the 'bioinformatician' to deposit study metadata and the outputs from statistical analyses (e.g. differential expression, enrichment). These results are then exported to an interactive JavaScript dashboard that can be interrogated on the user's local machine or deployed online to be explored by collaborators. The dashboard includes 'sortable' tables, interactive plots including network visualization, and fine-grained filtering based on statistical significance.

github.com/abbvie-external/OmicNavigator
Bug report File report

Key Metrics

Version 1.13.13
R ≥ 3.2.0
Published 2023-08-25 254 days ago
Needs compilation? no
License MIT
License File
CRAN checks OmicNavigator results

Downloads

Yesterday 5 0%
Last 7 days 80 -12%
Last 30 days 313 -3%
Last 90 days 923 -19%
Last 365 days 4.007 +13%

Maintainer

Maintainer

John Blischak

jdblischak@gmail.com

Authors

Terrence Ernst

aut

(Web application)

John Blischak

aut / cre

Paul Nordlund

aut

(Web application)

Justin Moore

aut

(UpSet-related functions and web application)

Joe Dalen

aut

(Barcode functionality and web application)

Akshay Bhamidipati

aut

(Web application)

Brett Engelmann

aut

Marco Curado

aut

(Improved plotting capabilities)

Joe LoGrasso

aut

(Support for plotly)

AbbVie Inc.

cph / fnd

Material

README
NEWS
Reference manual
Package source

In Views

Omics

Vignettes

OmicNavigator API
OmicNavigator User's Guide

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

OmicNavigator archive

Depends

R ≥ 3.2.0

Imports

data.table ≥ 1.12.4
graphics
jsonlite
stats
tools
utils

Suggests

faviconPlease
ggplot2
opencpu
plotly
tinytest ≥ 1.2.3
ttdo ≥ 0.0.6
UpSetR