CRAN/E | NAIR

NAIR

Network Analysis of Immune Repertoire

Installation

About

Pipelines for studying the adaptive immune repertoire of T cells and B cells via network analysis based on receptor sequence similarity. Relate clinical outcomes to immune repertoires based on their network properties, or to particular clusters and clones within a repertoire. Yang et al. (2023) doi:10.3389/fimmu.2023.1181825.

mlizhangx.github.io/Network-Analysis-for-Repertoire-Sequencing-/
github.com/mlizhangx/Network-Analysis-for-Repertoire-Sequencing-

Key Metrics

Version 1.0.4
R ≥ 3.1.0
Published 2024-03-03 62 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks NAIR results

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Maintainer

Maintainer

Brian Neal

Brian.Neal@ucsf.edu

Authors

Brian Neal

aut / cre

Hai Yang

aut

Daniil Matveev

aut

Phi Long Le

aut

Li Zhang

cph / aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Introduction to the NAIR package
buildRepSeqNetwork()/buildNet()
Cluster Analysis
Dual-Chain Network Analysis
Node-Level Network Properties
Supplementary Functions

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

NAIR archive

Depends

R ≥ 3.1.0

Imports

Rcpp ≥ 1.0.8
lifecycle
igraph
ggraph
ggplot2
grDevices
utils
Matrix
stats
dplyr
rlang

Suggests

knitr
rmarkdown
testthat ≥ 3.0.0

LinkingTo

Rcpp
RcppArmadillo ≥ 0.10.8.0.0