CRAN/E | MetaComp

MetaComp

EDGE Taxonomy Assignments Visualization

Installation

About

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

github.com/seninp-bioinfo/MetaComp
Bug report File report

Key Metrics

Version 1.1.2
R ≥ 3.1.0
Published 2018-06-18 2142 days ago
Needs compilation? no
License GPL-2
CRAN checks MetaComp results

Downloads

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Maintainer

Maintainer

Pavel Senin

senin@hawaii.edu

Authors

Pavel Senin

aut / cre

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

MetaComp archive

Depends

R ≥ 3.1.0

Imports

reshape2
plyr
dplyr
data.table
ggplot2
Cairo

Suggests

testthat