CRAN/E | Map2NCBI

Map2NCBI

Mapping Markers to the Nearest Genomic Feature

Installation

About

Allows the user to generate a list of features (gene, pseudo, RNA, CDS, and/or UTR) directly from NCBI database for any species with a current build available. Option to save downloaded and formatted files is available, and the user can prioritize the feature list based on type and assembly builds present in the current build used. The user can then use the list of features generated or provide a list to map a set of markers (designed for SNP markers with a single base pair position available) to the closest feature based on the map build. This function does require map positions of the markers to be provided and the positions should be based on the build being queried through NCBI.

Citation Map2NCBI citation info

Key Metrics

Version 1.4
R ≥ 3.5
Published 2020-01-24 1561 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks Map2NCBI results

Downloads

Yesterday 12 0%
Last 7 days 50 -6%
Last 30 days 188 -2%
Last 90 days 519 -31%
Last 365 days 2.369 -21%

Maintainer

Maintainer

Lauren Hanna

Lauren.Hanna@ndsu.edu

Authors

Lauren L. Hulsman Hanna
David G. Riley

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Map2NCBI archive

Depends

R ≥ 3.5
rentrez ≥ 1.2