CRAN/E | MSclassifR

MSclassifR

Automated Classification of Mass Spectra

Installation

About

Functions to classify mass spectra in known categories, and to determine discriminant mass-over-charge values. It includes easy-to-use functions for pre-processing mass spectra, functions to determine discriminant mass-over-charge values (m/z) from a library of mass spectra corresponding to different categories, and functions to predict the category (species, phenotypes, etc.) associated to a mass spectrum from a list of selected mass-over-charge values. Three vignettes illustrating how to use the functions of this package from real data sets are also available online to help users: , and .

github.com/agodmer/MSclassifR_examples

Key Metrics

Version 0.3.3
R ≥ 4.0
Published 2023-08-09 261 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks MSclassifR results

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Maintainer

Maintainer

Alexandre Godmer

alexandre.godmer@aphp.fr

Authors

Alexandre Godmer

aut / cre

Quentin Giai Gianetto

aut

Karen Druart

aut

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

MSclassifR archive

Depends

R ≥ 4.0
cp4p
caret
statmod
MALDIquant
MALDIrppa

Imports

e1071
MALDIquantForeign
mixOmics
reshape2
ggplot2
nnet
dplyr
fuzzyjoin
VSURF
metap
xgboost
glmnet
performanceEstimation
mltools
mclust
UBL
stats
limma
car
vita
randomForest

Suggests

knitr
rmarkdown