CRAN/E | MDSMap

MDSMap

High Density Genetic Linkage Mapping using Multidimensional Scaling

Installation

About

Estimate genetic linkage maps for markers on a single chromosome (or in a single linkage group) from pairwise recombination fractions or intermarker distances using weighted metric multidimensional scaling. The methods are suitable for autotetraploid as well as diploid populations. Options for assessing the fit to a known map are also provided. Methods are discussed in detail in Preedy and Hackett (2016) doi:10.1007/s00122-016-2761-8.

Key Metrics

Version 1.1
R ≥ 3.2.0
Published 2018-08-09 2093 days ago
Needs compilation? no
License GPL-3
License File
CRAN checks MDSMap results

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Maintainer

Maintainer

Bram Boskamp

bram.boskamp@bioss.ac.uk

Authors

Katharine F. Preedy
Christine A. Hackett

Material

Reference manual
Package source

Vignettes

MDSMap: High Density Linkage Maps using Multi-Dimensional Scaling

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

MDSMap archive

Depends

R ≥ 3.2.0

Imports

smacof ≥ 1.9.0
princurve ≥ 2.1.2
rgl
reshape

Suggests

qtl
R.rsp

Reverse Imports

polymapR