CRAN/E | GGoutlieR

GGoutlieR

Identify Individuals with Unusual Geo-Genetic Patterns

Installation

About

Identify and visualize individuals with unusual association patterns of genetics and geography using the approach of Chang and Schmid (2023) doi:10.1101/2023.04.06.535838. It detects potential outliers that violate the isolation-by-distance assumption using the K-nearest neighbor approach. You can obtain a table of outliers with statistics and visualize unusual geo-genetic patterns on a geographical map. This is useful for landscape genomics studies to discover individuals with unusual geography and genetics associations from a large biological sample.

Key Metrics

Version 1.0.2
R ≥ 3.5.0
Published 2023-10-15 197 days ago
Needs compilation? no
License MIT
License File
CRAN checks GGoutlieR results

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Maintainer

Maintainer

Che-Wei Chang

cheweichang92@gmail.com

Authors

Che-Wei Chang

aut / cre

Karl Schmid

ths

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

GGoutlieR archive

Depends

R ≥ 3.5.0

Imports

stats4
FastKNN
foreach
doParallel
parallel
scales
RColorBrewer
ggforce
rlang
stats
tidyr
utils
rnaturalearth
sf
ggplot2
cowplot

Suggests

rnaturalearthdata