CRAN/E | GARCOM

GARCOM

Gene and Region Counting of Mutations ("GARCOM")

Installation

About

Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.

Citation GARCOM citation info

Key Metrics

Version 1.2.2
R ≥ 3.5.0
Published 2022-12-23 496 days ago
Needs compilation? no
License MIT
License File
CRAN checks GARCOM results

Downloads

Yesterday 7 0%
Last 7 days 56 -21%
Last 30 days 236 -5%
Last 90 days 686 -28%
Last 365 days 3.042 -1%

Maintainer

Maintainer

Sanjeev Sariya

sanjeevsariya@gmail.com

Authors

Sanjeev Sariya

aut / cre / cph

Giuseppe Tosto

aut / cph

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

GARCOM archive

Depends

R ≥ 3.5.0

Imports

data.table ≥ 1.12.8
stats
vcfR ≥ 1.12.0

Suggests

testthat