CRAN/E | DiPALM

DiPALM

Differential Pattern Analysis via Linear Modeling

Installation

About

Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see: Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife. 2020 Sep 30;9(4). doi:10.7554/eLife.58993.

Citation DiPALM citation info

Key Metrics

Version 1.2
R ≥ 2.10
Published 2022-06-27 658 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks DiPALM results

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Maintainer

Maintainer

Ryan C. Sartor

sartorry@gmail.com

Authors

Ryan C. Sartor
Kathleen Greenham

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

DiPALM archive

Depends

R ≥ 2.10

Imports

limma
WGCNA
ggplot2

Suggests

edgeR