CRAN/E | DDRTree

DDRTree

Learning Principal Graphs with DDRTree

Installation

About

Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.

System requirements C++11

Key Metrics

Version 0.1.5
Published 2017-04-30 2544 days ago
Needs compilation? yes
License Artistic License 2.0
CRAN checks DDRTree results

Downloads

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Maintainer

Maintainer

Xiaojie Qiu

xqiu@uw.edu

Authors

Xiaojie Qiu
Cole Trapnell
Qi Mao
Li Wang

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

DDRTree archive

Depends

irlba

Imports

Rcpp

LinkingTo

Rcpp
RcppEigen
BH

Reverse Depends

monocle