CRAN/E | CooccurrenceAffinity

CooccurrenceAffinity

Affinity in Co-Occurrence Data

Installation

About

Computes a novel metric of affinity between two entities based on their co-occurrence (using binary presence/absence data). The metric and its MLE, alpha hat, were advanced in Mainali, Slud, et al, 2021 doi:10.1126/sciadv.abj9204. Various types of confidence intervals and median interval were developed in Mainali and Slud, 2022 doi:10.1101/2022.11.01.514801.

github.com/kpmainali/CooccurrenceAffinity
Bug report File report

Key Metrics

Version 1.0
R ≥ 4.1
Published 2023-05-03 350 days ago
Needs compilation? no
License MIT
License File
CRAN checks CooccurrenceAffinity results

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Maintainer

Maintainer

Kumar Mainali

kpmainali@gmail.com

Authors

Kumar Mainali

aut / cre

Eric Slud

aut

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 4.1
BiasedUrn ≥ 2.0.9

Imports

cowplot
ggplot2
plyr
reshape

Suggests

cooccur