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Computes a novel metric of affinity between two entities based on their co-occurrence (using binary presence/absence data). The metric and its MLE, alpha hat, were advanced in Mainali, Slud, et al, 2021 doi:10.1126/sciadv.abj9204. Various types of confidence intervals and median interval were developed in Mainali and Slud, 2022 doi:10.1101/2022.11.01.514801.
| github.com/kpmainali/CooccurrenceAffinity | |
| Bug report | File report |
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