CRAN/E | CSCDRNA

CSCDRNA

Covariance Based Single-Cell Decomposition of Bulk Expression Data

Installation

About

Provides accurate cell type proportion estimation by incorporating covariance structure in both single-cell and bulk RNA-seq datasets into the analysis. For more detail, see Karimnezhad, A. (2022) doi:10.1101/2022.05.13.491858.

Bug report File report

Key Metrics

Version 1.0.3
R ≥ 4.0
Published 2022-06-24 666 days ago
Needs compilation? no
License GPL-3
CRAN checks CSCDRNA results

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Maintainer

Maintainer

Ali Karimnezhad

ali.karimnezhad@gmail.com

Authors

Ali Karimnezhad

aut / cre / ctb

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CSCDRNA archive

Depends

R ≥ 4.0

Imports

nlshrink
limSolve
Biobase
BisqueRNA
methods
plyr
Seurat
MAST

Suggests

testthat ≥ 3.0.0