CRAN/E | BiOFI

BiOFI

Feature Identification Between Metabolome and Microbiome in Disease and Health

Installation

About

A strategy that provides the identification of metabolome and microbiome (Bi-omics) feature. It is able to screen out key/driving features (metabolites, microbes, and pathway functions) by an integrated importance score (IIS),combining sub-scores derived from difference, correlation, abundance, and network analysis. It is able to identify microbe-function-metabolite chains and to rank association pairs within specific functions.

Key Metrics

Version 0.1.0
R ≥ 3.5.0
Published 2022-09-22 585 days ago
Needs compilation? no
License MIT
License File
CRAN checks BiOFI results

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Maintainer

Maintainer

Tianlu Chen

chentianlu@sjtu.edu.cn

Authors

Tianlu Chen

aut / cre

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 3.5.0

Imports

dplyr
Hmisc
ggplot2
ggrepel
htmlwidgets
igraph
magrittr
networkD3
tidyverse
visNetwork
ppcor