CRAN/E | BayesianPlatformDesignTimeTrend

BayesianPlatformDesignTimeTrend

Simulate and Analyse Bayesian Platform Trial with Time Trend

Installation

About

Simulating the sequential multi-arm multi-stage or platform trial with Bayesian approach using the 'rstan' package, which provides the R interface for the Stan. This package supports fixed ratio and Bayesian adaptive randomization approaches for randomization. Additionally, it allows for the study of time trend problems in platform trials. There are demos available for a multi-arm multi-stage trial with two different null scenarios, as well as for Bayesian trial cutoff screening. The Bayesian adaptive randomisation approaches are described in: Trippa et al. (2012) doi:10.1200/JCO.2011.39.8420 and Wathen et al. (2017) doi:10.1177/1740774517692302. The randomisation algorithm is described in: Zhao W doi:10.1016/j.cct.2015.06.008. The analysis methods of time trend effect in platform trial are described in: Saville et al. (2022) doi:10.1177/17407745221112013 and Bofill Roig et al. (2022) doi:10.1186/s12874-022-01683-w.

github.com/ZXW834/BayesianPlatformDesignTimeTrend
System requirements GNU make
Bug report File report

Key Metrics

Version 1.2.3
R ≥ 4.0.0
Published 2023-12-07 148 days ago
Needs compilation? yes
License MIT
License File
CRAN checks BayesianPlatformDesignTimeTrend results

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Maintainer

Maintainer

Ziyan Wang

zw7g20@soton.ac.uk

Authors

Ziyan Wang

aut / cre

David Woods

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

MAMS-CutoffScreening-GP-Asymmetric-tutorial
MAMS-CutoffScreening-GP-Symmetric-tutorial
MAMS-CutoffScreening-tutorial
MAMS-trial-simulation-tutorial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

BayesianPlatformDesignTimeTrend archive

Depends

R ≥ 4.0.0
rstan ≥ 2.32.1

Imports

BiocManager ≥ 1.30.19
boot ≥ 1.3-28
doParallel ≥1.0.17
foreach ≥ 1.5.1
ggplot2 ≥ 3.4.0
ggpubr ≥0.4.0
iterators ≥ 1.0.13
laGP ≥ 1.5-9
lhs ≥ 1.1.6
matrixStats ≥ 0.61.0
methods
RColorBrewer ≥ 1.1-3
Rcpp ≥ 0.12.0
RcppParallel ≥ 5.0.1
reshape ≥ 0.8.8
rstantools ≥ 2.3.1.1
stringr ≥ 1.4.0

Suggests

rmarkdown
knitr

LinkingTo

BH ≥ 1.66.0
Rcpp ≥ 0.12.0
RcppEigen ≥ 0.3.3.3.0
RcppParallel ≥ 5.0.1
StanHeaders ≥ 2.26.0
rstan ≥2.26.1