CRAN/E | ACDC

ACDC

Analysis of Congruent Diversification Classes

Installation

About

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) doi:10.1038/s41586-020-2176-1.

github.com/afmagee/ACDC

Key Metrics

Version 1.0.0
R ≥ 3.5.0
Published 2022-01-12 847 days ago
Needs compilation? no
License GPL-3
CRAN checks ACDC results

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Maintainer

Maintainer

Bjørn Tore Kopperud

kopperud@protonmail.com

Authors

Bjørn Tore Kopperud

aut / cre

Sebastian Höhna

aut

Andrew F. Magee

aut

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.5.0
ggplot2

Imports

magrittr
deSolve
dplyr
tibble
colorspace
patchwork
latex2exp
tidyr

Suggests

knitr
rmarkdown
ape