CRAN/E | xQTLbiolinks

xQTLbiolinks

Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Installation

About

Enables users-customized data retrieval, processing, analysis, and data visualization of molecular quantitative trait locus and gene expression data from public resources through the application programming interface of 'GTEx' and of 'eQTL cagalogue'.

github.com/dingruofan/xQTLbiolinks
Bug report File report

Key Metrics

Version 1.5.2
R ≥ 4.00
Published 2023-07-05 294 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks xQTLbiolinks results

Downloads

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Last 365 days 2.009 -10%

Maintainer

Maintainer

Ruofan Ding

dingruofan1@foxmail.com

Authors

Ruofan Ding

aut / cre

Xudong Zou

aut / ctb

Yangmei Qin

aut / ctb

Gao Wang

aut / ctb

Lei Li

aut / ctb / cph

Material

README
NEWS
Reference manual
Package source

Vignettes

Quick_start
visualization

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

xQTLbiolinks archive

Depends

R ≥ 4.00

Imports

BiocGenerics
cowplot ≥ 1.1.1
curl ≥ 4.3.2
data.table ≥ 1.14.2
DBI
SummarizedExperiment
GenomeInfoDb
GenomicFeatures
GenomicRanges
ggplot2 ≥ 3.3.6
ggrepel
IRanges
jsonlite ≥ 1.7.2
viridis
RMySQL
stringr ≥1.4.0
utils ≥ 4.0.3

Suggests

VariantAnnotation
TxDb.Hsapiens.UCSC.hg38.knownGene
PupillometryR
coloc
knitr
rtracklayer
usethis
ggridges
CMplot
R.utils