CRAN/E | sybilcycleFreeFlux

sybilcycleFreeFlux

Cycle-Free Flux Balance Analysis (CycleFreeFlux)

Installation

About

Implement cycle-Free flux balance analysis (CycleFreeFlux), cycle-free flux variability, and Random Sampling of solution space. Desouki, A. A., Jarre, F., Gelius-Dietrich, G., & Lercher, M. J. (2015). CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributions. Bioinformatics, 31(13), 2159-2165. doi:10.1093/bioinformatics/btv096. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).

Key Metrics

Version 2.0.2
R ≥ 3.0.3
Published 2021-01-13 1196 days ago
Needs compilation? no
License GPL-3
CRAN checks sybilcycleFreeFlux results

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Maintainer

Maintainer

Abdelmoneim Amer Desouki

abdelmoneim.amer@uni-duesseldorf.de

Authors

Abdelmoneim Amer Desouki

aut / cre

Material

NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

sybilcycleFreeFlux archive

Depends

R ≥ 3.0.3
sybil
Matrix
MASS

Imports

methods

Suggests

cplexAPI ≥ 1.2.6
glpkAPI ≥ 1.2.1