CRAN/E | sybil

sybil

Efficient Constrained Based Modelling

Installation

About

This Systems Biology Package (Gelius-Dietrich et. al. (2012) doi:10.1186/1752-0509-7-125) implements algorithms for constraint based analyses of metabolic networks, e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis. The package is easily extendable for additional algorithms. Most of the current LP/MILP solvers are supported via additional packages.

Citation sybil citation info
www.cs.hhu.de/lehrstuehle-und-arbeitsgruppen/computational-cell-biology/software-contributions/sybil

Key Metrics

Version 2.2.0
R ≥ 3.2.0
Published 2021-05-31 1033 days ago
Needs compilation? no
License GPL-3
License File
CRAN checks sybil results

Downloads

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Maintainer

Maintainer

Mayo Roettger

mayo.roettger@hhu.de

Authors

Mayo Roettger

cre

Gabriel Gelius-Dietrich

aut

C. Jonathan Fritzemeier

ctb

Rajen Piernikarczyk

ctb

Marc Andre Daxer

ctb

Benjamin Braasch

ctb

Abdelmoneim Desouki

ctb

Martin J. Lercher

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

sybil – Efficient Constrained Based Modelling in R

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

sybil archive

Depends

R ≥ 3.2.0
Matrix
lattice

Imports

methods

Suggests

glpkAPI ≥ 1.2.8
cplexAPI ≥ 1.2.4
clpAPI ≥ 1.2.4
lpSolveAPI ≥ 5.5.2.0
parallel
grid

Reverse Depends

BacArena
GlobalFit
RSeed
sybilccFBA
sybilcycleFreeFlux
sybilDynFBA

Reverse Imports

exp2flux
g2f

Reverse Suggests

minval