CRAN/E | refdb

refdb

A DNA Reference Library Manager

Installation

About

Reference database manager offering a set of functions to import, organize, clean, filter, audit and export reference genetic data. Provide functions to download sequence data from Bold Systems () and NCBI GenBank . Designed as an environment for semi-automatic and assisted construction of reference databases and to improve standardization and repeatability in barcoding and metabarcoding studies.

fkeck.github.io/refdb/
Bug report File report

Key Metrics

Version 0.1.1
R ≥ 3.1.0
Published 2022-09-22 575 days ago
Needs compilation? no
License GPL-3
CRAN checks refdb results

Downloads

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Last 7 days 35 +6%
Last 30 days 211 -13%
Last 90 days 836 +30%
Last 365 days 2.734 +83%

Maintainer

Maintainer

Francois Keck

francois.keck@gmail.com

Authors

Francois Keck

aut / cre / cph

Material

README
Reference manual
Package source

Vignettes

Introduction to the refdb package
Downloading and combining data from NCBI Genbank and BOLD

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

refdb archive

Depends

R ≥ 3.1.0

Imports

tibble
readr
dplyr
stringr
tidyr
rentrez
bold
taxize
xml2
bioseq
ape
igraph
ggplot2
ggraph
yaml
rlang
rmarkdown
leaflet

Suggests

testthat ≥ 3.0.0
covr
DT
knitr
forcats