CRAN/E | liayson

liayson

Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes

Installation

About

Given an RNA-seq derived cell-by-gene matrix and an DNA-seq derived copy number segmentation, LIAYSON predicts the number of clones present in a tumor, their size, the copy number profile of each clone and the clone membership of each single cell (Andor, N. & Lau, B., et al. (2018) doi:10.1101/445932).

github.com/noemiandor/liayson

Key Metrics

Version 1.0.5
R ≥ 3.0
Published 2022-09-29 573 days ago
Needs compilation? no
License GPL-2
CRAN checks liayson results

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Maintainer

Maintainer

Noemi Andor

liayson.scRNA.R@gmail.com

Authors

Noemi Andor

Material

NEWS
Reference manual
Package source

Vignettes

liayson

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Old Sources

liayson archive

Depends

R ≥ 3.0

Imports

phangorn
RColorBrewer
ape
parallel
plyr
matlab
biomaRt
distances
arules
e1071
proxy
gplots
methods

Suggests

mclust
fpc
NbClust
modeest
pastecs
vegan