CRAN/E | idmodelr

idmodelr

Infectious Disease Model Library and Utilities

Installation

About

Explore a range of infectious disease models in a consistent framework. The primary aim of 'idmodelr' is to provide a library of infectious disease models for researchers, students, and other interested individuals. These models can be used to understand the underlying dynamics and as a reference point when developing models for research. 'idmodelr' also provides a range of utilities. These include: plotting functionality; a simulation wrapper; scenario analysis tooling; an interactive dashboard; tools for handling mult-dimensional models; and both model and parameter look up tables. Unlike other modelling packages such as 'pomp' (), 'libbi' () and 'EpiModel' (), 'idmodelr' serves primarily as an educational resource. It is most comparable to epirecipes () but provides a more consistent framework, an R based workflow, and additional utility tooling. After users have explored model dynamics with 'idmodelr' they may then implement their model using one of these packages in order to utilise the model fitting tools they provide. For newer modellers, this package reduces the barrier to entry by containing multiple infectious disease models, providing a consistent framework for simulation and visualisation, and signposting towards other, more research focussed, resources.

Citation idmodelr citation info
samabbott.co.uk/idmodelr/
github.com/seabbs/idmodelr
Bug report File report

Key Metrics

Version 0.4.0
R ≥ 3.3.0
Published 2022-09-02 574 days ago
Needs compilation? no
License GPL-3
CRAN checks idmodelr results
Language en-GB

Downloads

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Maintainer

Maintainer

Sam Abbott

contact@samabbott.co.uk

Authors

Sam Abbott

aut / cre

Akira Endo

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Model details
Parameter details
Other resources

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

idmodelr archive

Depends

R ≥ 3.3.0

Imports

dplyr ≥ 0.8.3
rlang ≥ 0.4.0
ggplot2 ≥ 3.2.0
viridis ≥ 0.5.1
magrittr ≥ 1.5
purrr ≥ 0.3.2
future ≥ 1.14.0
furrr ≥ 0.1.0
stringr ≥ 1.4.0
tibble ≥2.1.3
tidyr ≥ 0.8.3
deSolve ≥ 1.23

Suggests

testthat ≥ 2.1.1
rmarkdown ≥ 1.13
knitr ≥ 1.23
pkgnet ≥ 0.4.0
DT ≥ 0.7
vdiffr ≥ 0.3.1
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