CRAN/E | ggcoverage

ggcoverage

Visualize Genome Coverage with Various Annotations

Installation

About

The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation.

Key Metrics

Version 0.7.1
Published 2022-09-06 198 days ago
Needs compilation? no
License MIT
License File
CRAN checks ggcoverage results

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Maintainer

Maintainer

Yabing Song

songyb0519@gmail.com

Authors

Yabing Song

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

ggcoverage

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ggcoverage archive

Imports

dplyr
GenomicRanges
ggbio
ggh4x
ggplot2
ggrepel
grDevices
IRanges
magrittr
patchwork
RColorBrewer
rlang
Rsamtools
rtracklayer
scales
stats
utils
methods
GenomeInfoDb
S4Vectors
Biostrings
BSgenome
GenomicAlignments
reshape2
seqinr

Suggests

rmarkdown
knitr
BiocStyle
htmltools
BSgenome.Hsapiens.UCSC.hg19
graphics