CRAN/E | genBaRcode

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

Installation

About

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) doi:10.1093/nar/gku081) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) doi:10.1038/srep43249).

Key Metrics

Version 1.2.7
R ≥ 3.4
Published 2023-12-11 108 days ago
Needs compilation? no
License LGPL-2
License LGPL-2.1
License LGPL-3
CRAN checks genBaRcode results

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Maintainer

Maintainer

Lars Thielecke

lars.thielecke@tu-dresden.de

Authors

Lars Thielecke

Material

Reference manual
Package source

Vignettes

Introduction to the genBaRcode GUI
Introduction to genBaRcode

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

genBaRcode archive

Depends

R ≥ 3.4

Imports

methods
RColorBrewer
ape
ggnetwork
ggplot2
ggraph
igraph
network
phangorn
stringdist
visNetwork
reshape2
S4Vectors
shiny
ggtree
dplyr
VennDiagram
futile.logger
future
future.apply
tools
ShortRead
Biostrings

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