CRAN/E | exDE

exDE

Extensible Differential Equations for Mosquito-Borne Pathogen Modeling

Installation

About

Provides tools to set up modular ordinary and delay differential equation models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved by S3 dispatch on parameter lists for each component which is used to compute the full set of differential equations which may be solved using any of the packages for numerical simulation of differential equations in R. The methods implemented by this package are described in Wu et al. (2022) doi:10.1101/2022.11.07.22282044.

Citation exDE citation info
dd-harp.github.io/exDE/
Bug report File report

Key Metrics

Version 1.0.0
Published 2022-11-18 497 days ago
Needs compilation? no
License MIT
License File
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Maintainer

Maintainer

Sean L. Wu

slwood89@gmail.com

Authors

Sean L. Wu

aut / cre

David L. Smith

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Contributing
Ross-Macdonald Adult Mosquito Model
Basic Competition Aquatic Mosquito Model
Trace (exogenously forced) Aquatic Mosquito Model
5-3-4 Example
Hybrid MoI (Multiplicity of Infection) Human Model
SIP (Susceptible-Infected-Prophylaxis) Human Model
SIS (Susceptible-Infected-Susceptible) Human Model
Spatial Metrics
ITN-based Vector Control

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Imports

deSolve
expm
MASS

Suggests

ggplot2
data.table
knitr
rmarkdown
testthat ≥ 3.0.0