CRAN/E | epistasis

epistasis

Detecting Epistatic Selection with Partially Observed Genotype Data

Installation

About

An efficient multi-core package to reconstruct an underlying network of genomic signatures of high-dimensional epistatic selection from partially observed genotype data. The phenotype that we consider is viability. The network captures the conditional dependent short- and long-range linkage disequilibrium structure of genomes and thus reveals aberrant marker-marker associations that are due to epistatic selection. We target on high-dimensional genotype data where number of variables (markers) is larger than number of sample sizes (p >> n). The computations is memory-optimized using the sparse matrix output.

Key Metrics

Version 0.0.1-1
R ≥ 3.1.0
Published 2016-11-23 2683 days ago
Needs compilation? no
License GPL-3
CRAN checks epistasis results

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Maintainer

Maintainer

Pariya Behrouzi

pariya.behrouzi@gmail.com

Authors

Pariya Behrouzi
Danny Arends
Ernst C. Wit

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

epistasis archive

Depends

R ≥ 3.1.0
Matrix
glasso
tmvtnorm
igraph
parallel

Imports

methods