CRAN/E | autoGO

autoGO

Auto-GO

Installation

About

Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) doi:10.1186/s13059-014-0550-8. The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.

Bug report File report

Key Metrics

Version 0.9.1
R ≥ 3.5.0
Published 2023-02-13 410 days ago
Needs compilation? no
License MIT
License File
CRAN checks autoGO results

Downloads

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Maintainer

Maintainer

Fabio Ticconi

fabio.ticconi@gmail.com

Authors

Isabella Grassucci

aut

Eleonora Sperandio

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Fabio Ticconi

cre

Alice Massacci

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Lorenzo D'Ambrosio

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Matteo Pallocca

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Material

Reference manual
Package source

Vignettes

AutoGO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

autoGO archive

Depends

R ≥ 3.5.0
readr ≥ 2.1.2
dplyr ≥ 1.1.0
enrichR

Imports

ape
ComplexHeatmap
DESeq2
dichromat
ggplot2
ggrepel
grDevices
GSVA
imguR
openxlsx
purrr
RColorBrewer
reshape2
stats
stringr
SummarizedExperiment
textshape
tidyr
tidyselect
utils

Suggests

knitr
rlang
rmarkdown