CRAN/E | SimRAD

SimRAD

Simulations to Predict the Number of RAD and GBS Loci

Installation

About

Provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD estimates the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.

Key Metrics

Version 0.96
Published 2016-01-06 3032 days ago
Needs compilation? no
License GPL-2
CRAN checks SimRAD results

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Maintainer

Maintainer

Olivier Lepais

olepais@st-pee.inra.fr

Authors

Olivier Lepais

aut / cre

Jason Weir

aut

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SimRAD archive

Depends

Biostrings
ShortRead
zlibbioc

Imports

stats
graphics

Suggests

seqinr