CRAN/E | Rarefy

Rarefy

Rarefaction Methods

Installation

About

Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. (2019) doi:10.1016/j.ecolind.2019.105606; Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. W., … Chiarucci, A. (2016) doi:10.1016/j.ecolind.2016.04.026; Bacaro, G., Rocchini, D., Ghisla, A., Marcantonio, M., Neteler, M., & Chiarucci, A. (2012) doi:10.1016/j.ecocom.2012.05.007).

Key Metrics

Version 1.1.1
R ≥ 3.5.0
Published 2023-07-06 288 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks Rarefy results

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Maintainer

Maintainer

Elisa Thouverai

elisa.th95@gmail.com

Authors

Elisa Thouverai

aut / cre

Sandrine Pavoine

aut

Enrico Tordoni

aut

Duccio Rocchini

aut

Carlo Ricotta

aut

Alessandro Chiarucci

aut

Giovanni Bacaro

aut

Material

Reference manual
Package source

Vignettes

A quick introduction to rarefaction analisys using Rarefy

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Rarefy archive

Depends

R ≥ 3.5.0

Imports

ade4
adiv
ape
dplyr
geiger
methods
stats
vegan

Suggests

kableExtra
knitr
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picante
phytools
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sf