What does the R-package 'QuasiSeq' do?

Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood

Who authored QuasiSeq?

Steve Lund, Long Qu, Klirk Bhasavanich, Ian Marschner, R Core Team

CRAN/E | QuasiSeq

Installation

About

Identify differentially expressed genes in RNA-seq count data using quasi-Poisson or quasi-negative binomial models with 'QL', 'QLShrink' and 'QLSpline' methods described by Lund, Nettleton, McCarthy, and Smyth (2012) doi:10.1515/1544-6115.1826. Report bias-reduced estimates of log fold changes.

Key Metrics

Version	1.0-11-0
R	≥ 4.0.0
Published	2022-08-15 618 days ago
Needs compilation?	yes
License	GPL-2
License	GPL-3
CRAN checks	QuasiSeq results

Downloads

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Last 365 days	1.420 -57%

Maintainer

Steve Lund

lundsp@gmail.com

Authors

Steve Lund	aut / cre
Long Qu	aut / ctb
Klirk Bhasavanich	aut
Ian Marschner	aut (The author of glm2::glm.fit2, which was modified slightly leading to glm.fit3 in this package.)
R Core Team	aut (The author of stats::glm.fit, which was modified slightly leading to glm.fit3 in this package.)

Material

Reference manual
Package source

macOS

r-release	arm64
r-oldrel	arm64
r-release	x86_64
r-oldrel	x86_64

Windows

r-devel	x86_64
r-release	x86_64
r-oldrel	x86_64

Old Sources

QuasiSeq archive

Depends

R

≥ 4.0.0

Imports

edgeR
mgcv
pracma
utils
grDevices
graphics

Suggests

BB
nleqslv

Enhances

stats