CRAN/E | IntLIM

IntLIM

Integration of Omics Data Using Linear Modeling

Installation

About

This workflow takes analyte levels from two different types of analytes (e.g. gene expression and metabolite abundance), meta-information on each analyte type, and sample outcome and metadata to identify analyte pairs that are significantly associated with a continuous or discrete outcome (e.g. drug response or tumor type). The following references describe the methods in this package: (1) Jalal K. Siddiqui, et al. (2018) doi:10.1186/s12859-018-2085-6, (2) Andrew Patt, et al. (2019) doi:10.1007/978-1-4939-9027-6_23.

Key Metrics

Version 2.0.2
R ≥ 3.2.0
Published 2022-08-22 585 days ago
Needs compilation? no
License GPL-2
CRAN checks IntLIM results

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Maintainer

Maintainer

Tara Eicher

tara.eicher@nih.gov

Authors

Jalal Siddiqui

aut

Shunchao Wang

aut

Rohith Vanam

aut

Elizabeth Baskin

aut

Tara Eicher

aut / cre

Kyle Spencer

aut

Ewy Mathe

aut

Material

README
Reference manual
Package source

Vignettes

IntLIM: Integration through Linear Modeling

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.2.0

Imports

ComplexHeatmap
DT
ggplot2
graphics
grDevices
heatmaply
highcharter
htmltools
KernSmooth
margins
methods
MASS
RColorBrewer
reshape2
rmarkdown
shiny
shinydashboard
shinyFiles
shinyjs
stats
testthat
utils

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