CRAN/E | DeLorean

DeLorean

Estimates Pseudotimes for Single Cell Expression Data

Installation

About

Implements the DeLorean model (Reid & Wernisch (2016) doi:10.1093/bioinformatics/btw372) to estimate pseudotimes for single cell expression data. The DeLorean model uses a Gaussian process latent variable model to model uncertainty in the capture time of cross-sectional data.

System requirements GNU make

Key Metrics

Version 1.5.0
R ≥ 3.4.0
Published 2018-10-17 2011 days ago
Needs compilation? yes
License MIT
License File
CRAN checks DeLorean results

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Maintainer

Maintainer

John Reid

johnbaronreid@gmail.com

Authors

John Reid

Material

README
NEWS
Reference manual
Package source

Vignettes

DeLorean

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

DeLorean archive

Depends

methods
R ≥ 3.4.0
Rcpp ≥ 0.12.19

Imports

rstan ≥ 2.18.1
rstantools ≥ 1.5.1
dplyr ≥ 0.4.3
reshape2 ≥ 1.4
stringr ≥ 0.6.2
ggplot2 ≥ 1.0.0
MASS ≥ 7.3
broom
coda
parallel
functional
kernlab
fastICA
seriation
lattice
memoise

Suggests

knitr ≥ 1.8
knitcitations
rmarkdown
formatR
extrafont
testthat
svglite
VGAM

LinkingTo

BH ≥ 1.66.0-1
Rcpp ≥ 0.12.19
RcppEigen ≥0.3.3.4.0
rstan ≥ 2.18.1
StanHeaders ≥ 2.18.0