CRAN/E | DGEobj.utils

DGEobj.utils

Differential Gene Expression (DGE) Analysis Utility Toolkit

Installation

About

Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) doi:10.12688/f1000research.9005.3). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.

Key Metrics

Version 1.0.6
R ≥ 3.5.0
Published 2022-05-19 701 days ago
Needs compilation? no
License GPL-3
CRAN checks DGEobj.utils results
Language en-US

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Maintainer

Maintainer

Connie Brett

connie@aggregate-genius.com

Authors

John Thompson

aut

Connie Brett

aut / cre

Isaac Neuhaus

aut

Ryan Thompson

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

DGEobj.utils: An Example Workflow

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

DGEobj.utils archive

Depends

R ≥ 3.5.0

Imports

assertthat
DGEobj ≥ 1.0.3
dplyr
methods
stats
stringr

Suggests

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testthat
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