CRAN/E | CFAcoop

CFAcoop

Colony Formation Assay

Installation

About

Cellular cooperation compromises the plating efficiency-based analysis of clonogenic survival data. This tool provides functions that enable a robust analysis of colony formation assay (CFA) data in presence or absence of cellular cooperation. The implemented method has been described in Brix et al. (2020). (Brix, N., Samaga, D., Hennel, R. et al. "The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation." Radiat Oncol 15, 248 (2020). doi:10.1186/s13014-020-01697-y) Power regression for parameter estimation, calculation of survival fractions, uncertainty analysis and plotting functions are provided.

github.com/ZytoHMGU/CFAcoop
Bug report File report

Key Metrics

Version 1.0.0
R ≥ 3.5.0
Published 2021-06-11 1043 days ago
Needs compilation? no
License GPL-3
CRAN checks CFAcoop results

Downloads

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Last 7 days 27 -39%
Last 30 days 202 -11%
Last 90 days 871 +26%
Last 365 days 2.893 -4%

Maintainer

Maintainer

Daniel Samaga

daniel.samaga@helmholtz-muenchen.de

Authors

Daniel Samaga

cre / aut

Nikko Brix

aut

Kirsten Lauber

aut

Horst Zitzelsberger

aut

Material

Reference manual
Package source

Vignettes

CFAcoop

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

CFAcoop archive

Depends

R ≥ 3.5.0

Imports

Hmisc

Suggests

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